Microbiologist II (MDL)

SUMMARY 

The California Department of Public Health’s Microbial Diseases Laboratory Branch is responsible for diagnostic and surveillance testing, applied research projects, and education and training for the identification and characterization of bacterial, mycobacterial, fungal, and parasitic pathogens of public health importance.

 Under the direction of the Supervisor of the Mycobacterial Drug Susceptibility Unit, within the Mycobacterial, Mycotic & Parasitic Diseases Section of the Microbial Diseases Laboratory Branch, the Microbiologist II performs duties associated with receipt, processing, culture, and next generation sequencing of primarily mycobacterial and fungal isolates.

Some functions performed by the Microbiologist II will be conducted under Biosafety Level 3 conditions, frequently requiring application of appropriate respiratory protection. 

The position is Monday-Friday, 40 hours per week; weekend, holiday, and overtime coverage may be required during a public health emergency.

The hourly range for this position is $36.53 to $49.15 per hour depending on experience/qualifications. 

This position is grant funded and may be extended if funding is available.

If hired for this position, you will be required to provide proof that you are fully vaccinated for COVID-19 prior to your start date or have a valid religious or medical reason qualifying you for an exemption (that may or may not require an accommodation).

 ESSENTIAL FUNCTIONS


* Performs Next Generation Sequencing (NGS) on mycobacterial and/or fungal isolates.


* Performs NGS data management and coordination of data submissions from partner laboratories.


* Receives specimens and performs data entry into Laboratory Information Management System (LIMS).


* Cultivates microbial pathogens and applicable quality control strains.


* Develops and optimize protocols and standard operating procedures (SOPs) for comprehensive next generation sequencing using various NGS platforms, including but not limited to the Illumina, Nanopore and PacBio platforms.


* Performs DNA extraction, library preparation, and sequencing of mycobacterial, fungal, and bacterial pathogens using various sequencing platforms.


* Analyzes genomic sequences using validated pipelines and software.


* Performs or assists with clinical validations of NGS-based assays.


* Performs all work in compliance with MDL, Section, and Unit QC/QA policies for laboratory operations including biosafety, chemical hygiene, quality and other applicable standards.


* Complies with the Quality Management system established in the laboratory.


* Reviews test results for completeness and accuracy.


* Maintains inventory of essential chemicals, reagents, and disposables.


* Prepares reports for test result and other technical reports related to grants and projects.


* Communicates effectively with internal and external partners.


* Assists with planning education...